Hi Alan,
Can you please send the the command line that you used to generate the results, and a listing of the files in the mri directory of any subject you’ve analyzed?
Cheers,
/Eugenio

Juan Eugenio Iglesias
ERC Senior Research Fellow
Translational Imaging Group
University College London
http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/


On 22 Nov 2016, at 16:48, Alan Francis <alandarkenergy@gmail.com> wrote:

Hi Eugenio -

Hope all is well with you at UCL. I have the run the subfields algorithm on a set of subjects using Freesurfer 6.0. All the brains were processed without much fuss. However, when I ran the following:

quantifyHippocampalSubfields.sh DM_125 Cannabis_HSF.txt

It yielded nothing.

Can you please help me?

Thanks,

Alan

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Alan N
. Francis PhD

Instructor - Imaging Neuroscience
Brain Imaging Center
McLean Hospital
Harvard Medical School
115 Mill Street, Belmont, MA 02478
alanf@bwh.harvard.edu

                                                                                                          
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