Hello FreeSurfer Developers,
I am attempting to project my fiber tract endpoint into the inflated surface. According to the code in trac-paths, it needs to create the endpoint volume file by dmri_pathstats. But when the number of non-truncated streamlines is less than total streamlines, the program is terminated (but it works when the number is the same).
my code: dmri_pathstats --intrk $tractpath --out right_stats --ends right_endpt --dtbase $fullpath$tensordata
Then, I noted that dmri_projectEndPoints can do it straightly, but the usage make me confused.
my code: dmri_projectEndPoints -i $tractpath -sl ./surf/lh.orig -sr ./surf/rh.orig
-ol left_endpt.label -or right_endpt.label
-ri ./T1_brain.nii.gz
I wonder what should I do if I just want to project the fiber endpoint into the surface.
FreeSurfer version: freesurfer-linux-ubuntu18_x86_64-7.3.2
Platform: Ubuntu 18.04.5 on windows (WSL)
Best,
Rosie Zhou