External Email - Use Caution        

Hi Avnish,


Here is the output:

 

pwd 

/homes/2/it090


ls /usr/local/freesurfer

6.0.0                    fs-stable6-env-autoselect

6.0.1                    fs-stable710-env-autoselect
7.0.0                    fs-stable711-env-autoselect
7.0.0.backup             fs-stable-env-autoselect
7.1.0                    infant
7.1.0.backup             infant-dev
710_small                infant-dev-4347fc8
7.1.1                    infant-dev-4a14499
7.1.1.backup             infant-dev-ath
7.1.1-dev-freeze         infant-dev.backup
7.1.1-dev-freeze.backup  ldd.dev.20220424_0520.out.1
7.1.1_docker             lib
7.1.1-infant             nfs.list.1
7.1-tracula-beta         nfs.list.1.su
7.1-tracula-beta.backup  nmr-7.0.0-env
7.2.0                    nmr-7.1.0-env
7.2.0-beta               nmr-7.1.1-dev-freeze-env
7.2.0-beta.backup        nmr-7.1.1-env
7.2.0.previous           nmr-dev-env
7.3.0                    nmr-dev-env-bash
7.3.0-beta               nmr-stable50-env
7.3.0-beta.previous      nmr-stable53-env
7.3.0.previous           nmr-stable60-env
7.3.1                    nmr-stable6-env
7.3.1.previous           nmr-stable6-env-bash
7.3.2                    nmr-stable710-env
7.3.2.previous           nmr-stable710-env-bash
7.3.3                    nmr-stable711-env
7.3.3.previous           nmr-stable711-env-bash
build_20210928           PLATFORM
build-stamp.txt          sclimbic
cleanInstall.sh          sclimbic-linux-20210725.tar.gz
curley                   sclimbic-osx-20210725.tar.gz
dev                      stable
dev_20210626_0713        stable5_0_0
dev_20210629_0249        stable5_3_0
dev_20211123_1753        stable6
dev.20211125_1330        stable6_0_0
dev_20211128_0609        stable6.bak
dev_20220406_debug       stable7.1.0
dev.20221207             stable7.1.1
dev.backup               STAGE
dev-exp                  subjects
dev.previous             text
expand                   trctrain
fs-dev-env-autoselect    vtk_BACKUP
fsenv

Thanks for your help! 

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Kumar, Avnish
Sent: Tuesday, May 2, 2023 11:13 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Error Sourcing Freesurfer

 

        External Email - Use Caution        

Could you post the ouitput of these two commands:

pwd

ls /usr/local/freesurfer

Best,

Avnish

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Turco, Isabella <ITURCO@mgh.harvard.edu>
Sent: Tuesday, May 2, 2023 10:55 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Error Sourcing Freesurfer

 

        External Email - Use Caution        

Hello,

 

When trying to source Freesurfer version 7.1.1 using the command below, I’m getting the error “No such file or directory.”

source /usr/local/freesurfer/fs-stable711-env-autoselect

Any guidance on potential solutions would be much appreciated!

 

Thanks,

Isabella

 

Isabella Turco, B.S.

Senior Clinical Research Coordinator

Massachusetts General Hospital

Department of Anesthesia, Critical Care and Pain Medicine

617-643-2896

iturco@mgh.harvard.edu