hi doug,

here is the error, it told me there was a problem in an if statement somewhere.

if you use smooth = 2.0 instead of 2 you will get the error.

cheers,

satra

---
[snip]
fslmerge -t /mindhive/gablab/users/keshavan/scripts/BrainImagingPipelines/utils/test/fmunwarp/temp/ph.nii.gz /mindhive/gablab/users/keshavan/scripts/BrainImagingPipelines/utils/test/fmunwarp/temp/ph.zeros.nii.gz /mindhive/gablab/users/keshavan/scripts/BrainImagingPipelines/utils/test/fmunwarp/temp/dph
Masking with /mindhive/gablab/users/keshavan/scripts/BrainImagingPipelines/utils/test/fmunwarp/temp/brain.nii.gz
Standard error:
if: Badly formed number.
Return code: 1
Interface EPIDeWarp failed to run.
---

On Mon, Mar 26, 2012 at 10:39 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:
what does it do? What is the terminal output?

Satrajit Ghosh wrote:
epidewarp.fsl does not take non-integer smoothing kernel sizes.

cheers,

satra

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