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Dear Freesurfer experts,


I ran recon-all on a batch of subjects on the Linux CentOS virtual machine base on Windows 10. I found all files which should be generated in the "recon-all -autorecon3" are all missing in this batch of subjects. (

"recon-all -autorecon3"refer to the page of FreeSurfer Tutorial: Process Flow:

https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllTableStableV5.1). 

However, this problem did not appear on the MAC platform. I wonder that why this problem only appear on Linux platform. I attached the recon-all.log of a subject which the "recon-all -autorecon3"  files were missing. Could you kindly help me to speculate the cause of this problem. Thank you.


Regards


Frank

---------------------------

FRANK  C Y CHAU


Research assistant 

Division of Neurology

Department of Medicine


Tel: +852 6340 2553

Fax: 2872 5828


E-mail : cyfrank@hku.hk



Rm 304, 3/F, New Clinical building, Queen Mary Hospital, 102 Pokfulam Road, Hong Kong