Dear Freesurfer experts,

I have T1 and T2 images were unfortunately acquired with different resolution (i.e the voxel sizes is not the same)

T1 is 280X280X208

T2 is 270X270X200

I tried to run "recon-all"  but it failed to process the data. The command that I used is :

pbsubmit -c " recon-all -subjid subj1 -T2  PATH_TO_/T2.nii.gz -qcache -T2pial -all" 

 

How can I analyze these images? Is it a correct procedure to conform the voxels using "mri_convert". Is this procedure correct? does it hurt the anatomy of the images?

 

I highly appreciate your help 

John