Hi Catherine

that looks like something went wrong in the surface recon, not in the talairaching. Maybe a skullstrip problem? You need to investigate. Also, please cc the list so that others can answer!

thanks
Bruce
On Thu, 14 Feb 2013, Rongxiang Tang wrote:

> Hi Bruce,
>
> I attached two images...one is the target view and the other is the moveable
> view.
>
> Thanks,
> Catherine
>
>
> ____________________________________________________________________________
> From: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
> To: Rongxiang Tang <rongxiangtang@yahoo.com>
> Cc: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
> Sent: Thursday, February 14, 2013 1:33 PM
> Subject: Re: [Freesurfer] talairach transformation troubleshooting problem
>
> Hi Catherine
>
> can you send us an image of what you are looking at?
>
> thanks
> Bruce
> On Thu, 14 Feb 2013,
> Rongxiang Tang wrote:
>
> > Dear All,
> >
> > When I was checking the talairach transformation output, I noticed that
> some of the white matter was not included inside
> > the green line. Instead of drawing the green line to include all of the
> white matter of the whole brain, it somehow only
> > includes the bottom half of the white matter of the brain.
> >
> > Is there a way to fix that? 
> >
> > Thanks,
> > Catherine
> >
> >
>
>
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
>
>
>