Dear FreeSurfer experts,

I would like to get labels, get them in MNI305 space and to visualize them on the brain.mgz, which to be in MNI305.

I used following:

a) To get labels in MNI

$FREESURFER_HOME/bin/make_average_subject --out asub1 --subjects sub1

#creat labels

mkdir $SUBJECTS_DIR/sub1/labels

$FREESURFER_HOME/bin/mri_annotation2label --subject sub1 --hemi lh --outdir

#transform label to MNI305

$FREESURFER_HOME/bin/mri_label2label --srcsubject sub1 --srclabel $SUBJECTS_DIR/sub1/labels/lh.precentral.label --trgsubject asub1 --trglabel $SUBJECTS_DIR/sub1/labels/lh.precentral_mni305.label --regmethod surface --hemi lh

b) To visualize

tkregister2 --mov $SUBJECTS_DIR/asub1/mri/brain.mgz --noedit --s asub1 --regheader --reg $SUBJECTS_DIR/asub1/mri/register.dat

$FREESURFER_HOME/bin/mri_label2vol --label ./lh.postcentral_mni305.label --temp $SUBJECTS_DIR/asub1/mri/brain.mgz --subject asub1 --hemi lh --o asub1_lh_postcentral305.nii.gz --reg $SUBJECTS_DIR/asub1/mri/register.dat

$FREESURFER_HOME/bin/mri_convert $SUBJECTS_DIR/asub1/mri/brain.mgz $SUBJECTS_DIR/asub1/mri/abrain305.nii.gz

Is this correct?

Thank you.

Peka