External Email - Use Caution
The best solution (which I think was previously emailed to you) is to have an admin/IT person update your system by doing the following:
1) Copy the link for the freesurfer release install package matching your Ubuntu system, e.g., 7.3.2 freesurfer release on Ubuntu 18, 20, 22, from
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://surfer.nmr.mgh.harvard.edu/fswiki/rel7downloads
2) Download and install it with,
$ wget <link copied from the web page above>
.... say wget downloaded the file freesurfer_ubuntu18-7.3.2_amd64.deb ....
$ sudo apt-get install ./freesurfer_ubuntu18-7.3.2_amd64.deb
That should install libncurses and anything else that's needed automatically. Trying to piecemeal run commands to install individual system packages like libncurses is asking for more trouble.
- R.On 2/22/23 10:54, Iglesias Gonzalez, Juan E. (JIGLESIASGONZALEZ@mgh.harvard.edu) wrote:
Thanks for the interest in our software!
Could you please try running this command from the terminal?
sudo apt-get install libncurses5
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of behçet ayyıldız <behcetayyildizz@gmail.com>
Reply-To: Freesurfer support list <Freesurfer@nmr.mgh.harvard.edu>
Date: Wednesday, February 15, 2023 at 05:36
To: "Freesurfer@nmr.mgh.harvard.edu" <Freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] segmenThalamicNuclei.sh exited with ERRORS
External Email - Use Caution
Dear All,
I was using Linux Ubuntu to perform my analysis. However, they were changed with Linux ..... a couple of days ago. And while the segmentThalamicNuclei.sh command was running before the change, after the change it didn't run and I got the following message.
drodriguez@causal:/data_august/Daniela/Behcet/Freesurfer_pulvinar_OCD$ segmentThalamicNuclei.sh con_HaJa93
Setting ITK threads to 1
#--------------------------------------------
#@# Thalamic Nuclei processing Wed 15 Feb 2023 11:09:10 AM CET
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is ..:/sw/freesurfer/7.1.1//MCRv84//runtime/glnxa64:/sw/freesurfer/7.1.1//MCRv84//bin/glnxa64:/sw/freesurfer/7.1.1//MCRv84//sys/os/glnxa64:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/server:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/client:/sw/freesurfer/7..1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64:
/sw/freesurfer/7.1.1//bin/SegmentThalamicNuclei: error while loading shared libraries: libncurses.so.5: cannot open shared object file: No such file or directory
127
Linux causal.brain.mri.tu-muenchen.de 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux
Do you guys have any idea how to fix it ?
Thanks in advance.
--
Behçet Ayyıldız..
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