Respected sir,
 

I have run the code:

mri_label2vol --label lh-avg_central_sulcus.label --temp 1.nii --reg register.dat --fillthresh .5  --o cent-lh.nii.gz

it is giving error:

Loading registration from register.dat
regio_read_register(): No such file or directory
Could not open register.dat

There is no such directory formed after recon-all.

On Tue, Oct 3, 2017 at 1:08 PM, Fereshte <fereshte.ramezani@gmail.com> wrote:

Hi Vidhu,

You could use mri_vol2label or mri_binarize ( check freesurfer site or help in terminal for details ) 

Cheers 

On Tue, Oct 3, 2017 at 11:05 AM Vidhu Agrawal <mail2vidhu.alld@gmail.com> wrote:

Respected Sir,

I meant to ask that if i want to separate for example hippocampus and view as a separate volume what code should i implement?

On Mon, Oct 2, 2017 at 6:44 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

what do you mean by separate? Extract into a separate volume? If so, you
can use mri_extract_labels or mri_binarize with the --match flag.

cheers
Bruce
On Mon, 2
Oct 2017, Vidhu Agrawal wrote:

> how to separate any sub cortical region in freesurfer ?
>
>
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