On Aug 10, 2017, at 4:40 AM, Z Hessam <z.hessam@gmail.com> wrote:it shows:
-rwxrwxrwx 1 8481 1590 0 Aug 9 22:30 /media/hessam91/driver2/freesurfer/freesurfer/subjects/bert/mri/T1.mgz_______________________________________________On Thu, Aug 10, 2017 at 2:55 AM, Ruopeng Wang <rpwang@nmr.mgh.harvard.edu> wrote:Hmm, if you run:ls -l /media/hessam91/driver2/freesurfer/freesurfer/ subjects/bert/mri/T1.mgz what does it show?On Aug 9, 2017, at 4:47 PM, Z Hessam <z.hessam@gmail.com> wrote:of course:thanks a lot for your attention
hessam@ubuntu:/media/hessam/driver2/freesurfer/subjects$ freeview -v bert/mri/T1.mgz bert/mri/wm.mgz bert/mri/brainmask.mgz bert/mri/aseg.mgz:colormap= lut:opacity=0.2 -f bert/surf/lh.white:edgecolor= blue bert/surf/lh.pial:edgecolor= red bert/surf/rh.white:edgecolor= blue bert/surf/rh.pial:edgecolor= red
mghRead(/media/hessam91/driver2/freesurfer/freesurfer/ subjects/bert/mri/T1.mgz, -1): read error
MRIread failed: Unable to read from /media/hessam91/driver2/freesurfer/freesurfer/ subjects/bert/mri/T1.mgz
mghRead(/media/hessam91/driver2/freesurfer/freesurfer/ subjects/bert/mri/T1.mgz, -1): read error
mghRead(/media/hessam91/driver2/freesurfer/freesurfer/ subjects/bert/mri/T1.mgz, -1): read error
MRIread failed: Unable to read from /media/hessam91/driver2/freesurfer/freesurfer/ subjects/bert/mri/T1.mgz
mghRead(/media/hessam91/driver2/freesurfer/freesurfer/ subjects/bert/mri/T1.mgz, -1): read error ______________________________On Wed, Aug 9, 2017 at 10:57 PM, Ruopeng Wang <rpwang@nmr.mgh.harvard.edu> wrote:Can you copy and paste the exact command line you ran and the error message?
Ruopeng
On 08/09/2017 02:21 PM, Z Hessam wrote:
I try it without \ chars, works for some other subjects
but it doesn't work for one of them,and now I can even open it with GUI, while I could open it before.
It seems that is time variant!
Should I run "recon-all ..." again for that subject?
On Wed, Aug 9, 2017 at 10:32 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
can you try it without all the \ characters? You shouldn't need them if it's all on one line
On Wed, 9 Aug 2017, Z Hessam wrote:
$>freeview -v \ bert/mri/T1.mgz \ bert/mri/wm.mgz \
bert/mri/brainmask.mgz \ bert/mri/aseg.mgz:colormap=lut:opacity=0.2
mri_read(): couldn't determine type of file
/media/hessam91/driver2/freesurfer/freesurfer/subjects/
MRIread failed: Unable to read from
/media/hessam91/driver2/freesurfer/freesurfer/subjects/
mri_read(): couldn't determine type of file
/media/hessam91/driver2/freesurfer/freesurfer/subjects/
I use the example 4 in the "download and install" page of site
On Wed, Aug 9, 2017 at 8:44 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu>
wrote:
hmmm, that looks ok, but it's hard to tell with all the
backslashes and blank lines and such. Can you send the full
command on a single line (e.g. by hitting up-arrow in the
terminal window) and the actual output of freeview?
On Wed, 9 Aug 2017, Z Hessam wrote:
Hello Freesurfer Developers,
I have problem when I use "freeview" example code in
terminal,
freeview -v \
bert/mri/T1.mgz \
bert/mri/wm.mgz \
bert/mri/brainmask.mgz \
bert/mri/aseg.mgz:colormap=lut:opacity=0.2 \
-f \
bert/surf/lh.white:edgecolor=blue \
bert/surf/lh.pial:edgecolor=red \
bert/surf/rh.white:edgecolor=blue \
bert/surf/rh.pial:edgecolor=red
it tell "Failed to load MRI <subject_dir>",
mri_read(): couldn't determine type of file
<subject_dir>
MRIread failed: Unable to read from <subject_dir>
mri_read(): couldn't determine type of file
<subject_dir>
but i can load wm.mgz and other existed files in
GUI.
please help me to know why this error happend? and
what should I do to solve
this?
I've searched the list, I found a similar errors,
but wasn't helpful answer reported.
help me please
regards
On Wed, Aug 9, 2017 at 7:56 PM, Z Hessam
<z.hessam@gmail.com> wrote:
Hello Freesurfer Developers,
I have problem when I use "freeview" example code in
terminal,
freeview
-v \
bert/mri/T1.mgz \
bert/mri/wm.mgz \
bert/mri/brainmask.mgz \
bert/mri/aseg.mgz:colormap=lut:opacity=0.2 \
-f \
bert/surf/lh.white:edgecolor=blue \
bert/surf/lh.pial:edgecolor=red \
bert/surf/rh.white:edgecolor=blue \
bert/surf/rh.pial:edgecolor=red
it tell "Failed to load MRI <subject_dir>", but i
can load wm.mgz and other existed files in GUI.
please help me to know why this error happend? and
what should I do to solve
this?
I've searched the list, I found a similar errors,
but wasn't helpful answer reported.
help me please
regards
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