I am attempting to run a permutation simulation to correct for multiple comparisons and am getting the following error:

< mri_glmfit-sim --glmdir /home/cns_2/Desktop/SC_PF_analysis/qdec/Untitled --perm 1000 1.3 neg --perm-resid   when running mri_glmfit, make sure to include --eres-save >

Attached is the mri glmfit log. I ran the command with the --eres-save flag, and the eres.mgh file is generated in the glm directory.

I have downloaded the patch and have run this style of analysis multiple times without issue until today.

I appreciate any help!

Please let me know if you need any additional information.

Thanks,