setenv SUBJECTS_DIR /home/EAS_Freesurfer
set dtroot = /home/EAS_Freesurfer
set subjlist = ( Sub001 )
set dcmroot = /home/EAS_Freesurfer
set dcmlist= ( DTI_Sub001.nii )
set bvecfile = ( DTI_Sub001_bvecs.txt)
set bvalfile = ( DTI_Sub001_bvals.txt)
set doeddy = 1
set dorotbvecs = 1
set usemaskanat = 1
set thrbet = 0.3
set doregflt = 1
set doregbbr = 1
set doregmni = 1
set mnitemp = /gmrrc/mrbin/fsl.v5.0/data/standard/MNI152_T1_1mm_brain.nii.gz
set doregcvs = 0
set pathlist = ( lh.cst_AS rh.cst_AS \
lh.unc_AS rh.unc_AS \
lh.ilf_AS rh.ilf_AS \
fmajor_PP fminor_PP \
lh.atr_PP rh.atr_PP \
lh.ccg_PP rh.ccg_PP \
lh.cab_PP rh.cab_PP \
lh.slfp_PP rh.slfp_PP \
lh.slft_PP rh.slft_PP )
set ncpts = (6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5)

