On 2/12/2020 2:46 PM, Faizan Anwar wrote:

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Hello,

My name is Faizan Anwar. I am currently a undergraduate student at UCLA. I had two questions regarding freesurfer:

Is FSAVERAGE file a universal template that could be used with any set of subject data, or is it a specific file created during recon all. If yes, how can I recreate fsaverage file with a freesurfer processed dataset (i.e. recon all was already done on this dataset and I have moved the FS data to a different computer without the FSAVERAGE file

fsaverage is general. When it shows up in your SUBJECTS_DIR, it is actually a symbolic link to $FREESURFER_HOME/subjects/fsaverage. You cannot create new exact fsaverage

Also, I wanted to ask if there is a way to extract LabelROI of multiple subject at the same time alike aseg2stats command? and If there is a way to do a group analysis and visualize the difference within that specific region?

I don't understand what you are trying to do. Can you elaborate?

Any assistance in these two questions would be extremely helpful. Looking forward to your reply

Thank you,

Sincerely,

Faizan Anwar
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