External Email - Use Caution        

Hi FS Experts again,


Would it be possible to use an MNI Thalamus mask from FSL and possibly register it to my FS brain using FS ? I know it won't be based on the subject anatomy and should probably be smoothed to account for inter subject variability. Would this be vastly inferior to the subject specific way, realising that the subdivisions of theThalamus isn't available yet?


Thanks and regards 


Erik     


From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Erik O'Hanlon <erikohanlon@rcsi.ie>
Sent: 01 June 2018 12:35:55
To: Freesurfer support list
Subject: Re: [Freesurfer] creating a mask for the thalamus parcellations
 

        External Email - Use Caution        

Thanks Bruce and Eugenio.


it will be great to have so looking forward to it.


Cheers


Erik


From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Iglesias Gonzalez, Eugenio <e.iglesias@ucl.ac.uk>
Sent: 31 May 2018 17:53:26
To: Freesurfer support list
Subject: Re: [Freesurfer] creating a mask for the thalamus parcellations
 
        External Email - Use Caution       

I probably shouldn’t say this, but I will, anyway:  It’s coming soon! 

--
Juan Eugenio Iglesias
ERC Senior Research Fellow
Centre for Medical Image Computing (CMIC)
University College London
http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/
 

On 31/05/2018, 17:46, "freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Bruce Fischl" <freesurfer-bounces@nmr.mgh.harvard.edu on behalf of fischl@nmr.mgh.harvard.edu> wrote:

    not yet, sorry. We are working on it....
    Bruce
    On Thu, 31 May 2018, Erik O'Hanlon
    wrote:
   
    >        External Email - Use Caution
    >
    > Dear FS Experts,
    >
    >
    > Is it possible to use the labels found in the FreesurferColourLUT.txt for the Thalamus parcellations (8001-8014) using the mri_extract_label command? If so, what is the correct input file to use ?
    >
    >
    > mri_extract_label <input file????> 8001 L_Ant_thalamus.mgz
    >
    >
    > Thanks
    >
    >
    > Cheers
    >
    >
    > Erik
    >
    > Erik O'Hanlon
    > Postdoctoral researcher
    >
    > [cid:rcsi-crest-signature_f581c185-1d03-45c8-a786-23d8ece3d391.png]
    >
    > RCSI Psychiatry
    > Royal College of Surgeons in Ireland
    > Beaumont Road, Beaumont D9 Ireland
    > T: 8093740
    > E: erikohanlon@rcsi.ie W: www.rcsi.com<http://www.rcsi.com/>
    >
    >
    > Transforming Healthcare Education, Research and Service: RCSI Strategic Plan 2018-2022<http://www.rcsi.ie/strategy2018>
    >
    >
    > RCSI LEADING THE WORLD TO BETTER HEALTH
    >
    > [cid:both3_b9da8717-e91f-4ea7-8729-dc2c4d0a7a5f.png]
    >
    >
    _______________________________________________
    Freesurfer mailing list
    Freesurfer@nmr.mgh.harvard.edu
    https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
   
   
    The information in this e-mail is intended only for the person to whom it is
    addressed. If you believe this e-mail was sent to you in error and the e-mail
    contains patient information, please contact the Partners Compliance HelpLine at
    http://www.partners.org/complianceline . If the e-mail was sent to you in error
    but does not contain patient information, please contact the sender and properly
    dispose of the e-mail.
   
   


_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


Erik O'Hanlon
Postdoctoral researcher

RCSI Psychiatry
Royal College of Surgeons in Ireland
Beaumont Road, Beaumont D9 Ireland
T: 8093740
E: erikohanlon@rcsi.ie W: www.rcsi.com

Transforming Healthcare Education, Research and Service: RCSI Strategic Plan 2018-2022

RCSI LEADING THE WORLD TO BETTER HEALTH




Erik O'Hanlon
Postdoctoral researcher

RCSI Psychiatry
Royal College of Surgeons in Ireland
Beaumont Road, Beaumont D9 Ireland
T: 8093740
E: erikohanlon@rcsi.ie W: www.rcsi.com

Transforming Healthcare Education, Research and Service: RCSI Strategic Plan 2018-2022

RCSI LEADING THE WORLD TO BETTER HEALTH