External Email - Use Caution
It seems it could be a version conflict. Please try unsetting DYLD_LIBRARY_PATH.
Cheers,
/Eugenio
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Juan Eugenio Iglesias
Centre for Medical Image Computing (CMIC)
Department of Medical Physics and Biomedical Engineering
University College London
http://www.jeiglesias.com
From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Jaime Gomez <borriquear@gmail.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Tuesday, 30 October 2018 at 11:10
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] segmentHA_T1 error DYLD_LIBRARY_PATH
External Email - Use Caution
Hi,
I have this error when I try to run segmentHA_T1.sh
It seems that it sets up the wrong DYLD_LIBRARY_PATH, the one I have in my bash_profile is
/Applications/MATLAB_R2016a.app/bin/maci64:/Applications/MATLAB_R2016a.app/sys/os/maci64:/Applications/MATLAB_R2016a.app/bin/maci64:/Applications/MATLAB_R2016a.app/sys/os/maci64:
[~/val...V/003_SAG_3D_IR] $ segmentHA_T1.sh sujeto_uno
#--------------------------------------------
#@# Hippocampal Subfields processing (T1) left Tue Oct 30 12:04:16 CET 2018
------------------------------------------
Setting up environment variables
---
DYLD_LIBRARY_PATH is .:/Applications/freesurfer/MCRv84//runtime/maci64:/Applications/freesurfer/MCRv84//bin/maci64:/Applications/freesurfer/MCRv84//sys/os/maci64:
dyld: Library not loaded: @loader_path/libmwmclmcrrt.8.0.dylib
Referenced from: /Applications/freesurfer/bin/segmentSubjectT1_autoEstimateAlveusML.app/Contents/MacOS/segmentSubjectT1_autoEstimateAlveusML
Reason: image not found
/Applications/freesurfer/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh: line 38: 7887 Abort trap: 6 "${exe_dir}"/segmentSubjectT1_autoEstimateAlveusML.app/Contents/MacOS/segmentSubjectT1_autoEstimateAlveusML $args
#--------------------------------------------
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