Dear Antonio,

“-norm3diters“ are the iterations of mri_normalize, whereas “-nuiterations” refers to the number of cycles of mri_nu_correct.mni. I suppose they both work in v6. If not you can simply create a file with expert options.

Hope this helps!

Best,

Falk

Von: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] Im Auftrag von Antonio Algaze Beato
Gesendet: Donnerstag, 17. August 2017 19:08
An: freesurfer@nmr.mgh.harvard.edu
Betreff: [Freesurfer] -nuiterations and -norm3diters under FreeSurfer 6.0

Hi,

I have a question regarding -nuiterations and -norm3diters. I would like to get a feel for the options available for fine-tuning the intensity normalization in FreeSurfer 6.0.

I've seen mention of -nuiterations on some posts. Is this still an option in FreeSurfer 6.0? 

The reason I ask is because under the "Expert Preferences" section of recon-all -help there's only mention of "-norm3diters". However, further down, under the second "Expert Preferences" section, there's a description of -nuiterations as well as -norm3diters. 

Thanks!