$Id: make_average_surface,v 1.62 2016/02/16 17:17:20 zkaufman Exp $

Wed Jan 29 19:14:37 EST 2020

/projectnb/perlab/projects/DNAP/brains/alex4

output ddir is /projectnb/perlab/projects/DNAP/brains

uid=323856(gat) gid=275709(perpwm) groups=275709(perpwm),275954(perlab)

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make_average_surface

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Wed Jan 29 19:14:37 EST 2020

/projectnb/perlab/projects/DNAP/brains/alex4

/share/pkg.7/freesurfer/6.0/install/bin/make_average_surface

--out alex4 --subjects p0110 p0246 --surf-reg surf.t1t2.ratio

input subjects: p0110 p0246

output subject: alex4

mri_add_xform_to_header -c auto /projectnb/perlab/projects/DNAP/brains/alex4/mri/mni305.cor.mgz /projectnb/perlab/projects/DNAP/brains/alex4/mri/mni305.cor.mgz

INFO: extension is mgz

#@# Making lh registration template ---------

/projectnb/perlab/projects/DNAP/brains/alex4

mris_make_template -norot -annot aparc lh surf.t1t2.ratio p0110 p0246 lh.reg.template.tif

not aligning hemispheres before averaging.

zeroing medial wall in aparc

creating new parameterization...

processing subject p0110 (1 of 2)

reading spherical surface /projectnb/perlab/projects/DNAP/brains/p0110/surf/lh.surf.t1t2.ratio...

MRISread(/projectnb/perlab/projects/DNAP/brains/p0110/surf/lh.surf.t1t2.ratio): could not open file

No such file or directory

mris_make_template: could not read surface file /projectnb/perlab/projects/DNAP/brains/p0110/surf/lh.surf.t1t2.ratio

No such file or directory