I believe it is the cluster-forming threshold. I was running the following:
mri_glmfit-sim --glmdir site-gender-group-prothaplotype.glmdir --cache 1.3 abs --cwpvalthresh  0.05 --2spaces
mri_glmfit-sim --glmdir site-gender-group-prothaplotype.glmdir --cache 2 abs --cwpvalthresh  0.05 --2spaces

Kind regards,

Bronwyn Overs
Research Assistant

Neuroscience Research Australia
Margarete Ainsworth Building
Barker Street Randwick Sydney NSW 2031 Australia
M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265

On 7/11/2014 4:03 am, Douglas N Greve wrote:
Do you mean cluster-wise threshold or cluster-forming threshold?

On 11/06/2014 01:12 AM, Bronwyn Overs wrote:
Dear Freesurfer Mailing list,

While running a glm anlaysis with monte carlo correction (using 
cluster wise thresholds of .05 & .01), I encountered the following issue:
When examining the clusters formed for each of the different cluster 
wise thresholds, the .05 threshold resulted in a superior temporal 
cluster, while the .01 threshold resulted in a two lateral occipital 
clusters that did not overlap with the cluster from the .05 threshold.

Do you know why there would be no overlap between significant regions 
at different cluster wise thresholds? I was aware that a cluster which 
is significant at .05 may split or be smaller at .01, but I do not 
know why entirely different regions would be significant.
-- 

Kind regards,

Bronwyn Overs
Research Assistant

Neuroscience Research Australia

Neuroscience Research Australia
Margarete Ainsworth Building
Barker Street Randwick Sydney NSW 2031 Australia
*M* 0411 308 769 *T* +61 2 9399 1883 *F* +61 2 9399 1265

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