Hello,

 

I am using freesurfer for the first time, and I am having issues when I try to run recon-all for my first subject.  My details are:

 

FREESURFER_HOME: /usr/local/freesurfer

 

Build stamp: freesurfer-Linux-centos4-stable-pub-v5.3.0

 

Debian version: jessie/sid

 

Kernel info: Linux 3.13.0-37-generic i686

 

Subject name: Y03

 

Command line: fsuser@xubuntu-VirtualBox:~/host/Sprachlernen$ recon-all  -all -subjid Y03

 

Error message: "recon-all exited with ERRORS at Fri Oct 10 02:42:23 EDT 2014"

 

recon-all.log: attached.

 

I am running freesurfer within Virtual Box on a windows host, and my subjects folder is in a shared folder 

 

/home/fsuser/host 

 

and is called 

 

/home/fsuser/host/Sprachlernen/Subjects

 

I first mounted this shared folder by entering

 

sudo mount -t vboxsf Kate /home/fsuser/host

 

and then designated this as my subjects folder by entering

 

export  SUBJECTS_DIR=/home/fsuser/host/Sprachlernen/Subjects

 

I then created the subject data directory using 

 

recon-all -i Y03_1 -i Y03_2 -subjid Y03 

 

before running recon-all -all. Any assistance would be much appreciated.

 

Kind regards,

 

Kate Riggall