Yeah at the moment it’s only on the development version.
--
Juan Eugenio Iglesias
http://www.jeiglesias.com
From:
freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Huang, Yujing <YHUANG43@mgh.harvard.edu>
Date: Monday, January 13, 2025 at 2:37 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Issue with mri_histo_atlas_segment_fireants Command
I don’t think ‘mri_histo_atlas_segment_fireants’ is available in 8.0.0-beta. It will be in next FS 8.0 release.
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu>
On Behalf Of Taghizadeh Mortezaei, Nima
Sent: Monday, January 13, 2025 12:12 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Issue with mri_histo_atlas_segment_fireants Command
Dear FreeSurfer Developers and Community,
I am trying to run Bayesian Segmentation with the Histological Atlas "NextBrain" in FreeSurfer. I have already downloaded and uncompressed the atlas into the
ERC_bayesian_segmentation folder. However, when I attempt to proceed, I encounter the following error:
zsh: command not found: mri_histo_atlas_segment_fireants
I am using FreeSurfer version
freesurfer-macOS-darwin_x86_64-8.0.0-beta-20241103-b8aacdc.
Could you please let me know if this command is supported in my version or if I am missing any setup steps?
Thank you for your assistance.
Best regards,
Nima Taghizadeh Mortezaei, M.D.
Radiation Oncology Research Fellow, MGH