Dear FS experts,

 

If I run recon-all with the -seg-wlo <threshold> flag to include more white matter in the segmentation, and then remove some stray white matter voxels on the output wm.mgz using recon edit, necessitating another run of recon-all, do I again need to include -seg-wlo <threshold> in that next run of recon-all?

 

Any assistance anyone might be able to provide would be greatly appreciated.

 

 

Thank you so very much!
Emily Harriott

(doctoral student, Vanderbilt University)