Dear team,
I am running mri_gtmpvc using RBV
correction, however when I do so I get an error message saying
it cannot find $SUBJECTS_DIR/$subject_id/mri/orig.mgz needed
for RBV.
Our Freesurfer outputs are nested as
$subject_id/MPRAGE/Freesurfer/mri/orig.mgz. I tried mri_gtmpvc
with “--sd” flag as well, still same error as when I set “--sd
$subject_id/MPRAGE/Freesurfer” it tries to find the file as
$subject_id/MPRAGE/Freesurfer/$subject_id/mri/orig.mgz. One
way I can avoid doing this is by creating a soft link with the
expected path, however if there is a better way to do so that
would be great.
Thank you,
Sneha