Would it be possible to send us your annoy file? Are you using the latest
dev version of freeview or the one with 5.3 release?
Best,
Ruopeng
On Nov 29, 2014, at 4:51 AM, angela.favaro@unipd.it wrote:
Hi all,
I have a problem with freeview and I am not sure about the command line
to
be used to view a mask.
I have created an annot file and I would like to have a picture of the
mask in the inflated brain with curvature. However when I use the annot
file with tksurfer I am able to do so, but with freeview the brain
become
all black (not in the mask) when the annot file is used.
I have read the freeview manual, but I did not fond help in using
freeview
with command line. Where can I find some help?
the command with tksurfer was:
tksurfer fsaverage lh inflated -curv -gray -annot mymask.annot
with freeview I tried this:
freeview -f
fsaverage/surf/lh.inflated:overlay=lh.curv:overlay_threshold=2,5
:annot=mymask.annot -viewport 3d
thank you for any help!
Angela
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