Hi Saman,

It looks like with the --subjects flag you are pointing Freesurfer to the stats directory within a subject directory (where Freesurfer expects the subject directory). aparcstats2table and asegstats2table assume a standard Freesurfer directory configuration so try entering just the subject directory (one level up from stats) is enough and Freesurfer will know to access the proper stats files that you specify. Also try and double check your SUBJECTS_DIR.

Cheers,

Bill

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of saman fouladi <smnfouladi@yahoo.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Tuesday, November 3, 2020 at 12:24 PM
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] (no subject)

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hi

I run in linux command:

"""""""""""""""""""""""""""""""""""""""""""

aparcstats2table --hemi lh  --subjects /home/team33/MRI4/subj10/stats --parc aparc.a2009s  --meas meancurv --tablefile /home/team33/ aparcstats.txt

"""""""""""""""""""""""""""""""""""""""""""

but show below error an i can not solve it nix:

"""""""""""""""""""""""""""""""""""""""""""

 File "/usr/local/freesurfer/bin/aparcstats2table", line 156
    print 'ERROR: atleast 1 subject must be provided'

"""""""""""""""""""""""""""""""""""""""""""

I changed the code several times, but in all cases there is this error.

This error also happens to asegstats2table.

please help me