Don, if that doesn't work, try the procedure outlined in this paper, although it is rather involved: http://www.architalbiol.org/index.php/aib/article/viewArticle/1221

Anthony

On 11/17/15 8:27 AM, Bruce Fischl wrote:
Hi Don

it's impossible to say. Certainly 6.0 will be your best bet as it handles enlarged ventricles much better. Try 6.0 beta with the -bigventricles flag and see how it goes

cheers
Bruce
On Tue, 17 Nov 2015, Krieger, Donald N. wrote:


A few cuts from a grossly abnormal scan are attached.

Do you think freesurfer can effectively segment this one?

If so, please point us in the right direction to get started with it.

Thanks. - Don

  





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