reading aseg from /Users/IngvalsonLab/Desktop/avgseg_seg_test/mri/aseg.auto_noCCseg.mgz
reading norm from /Users/IngvalsonLab/Desktop/avgseg_seg_test/mri/norm.mgz
0 voxels in left wm, 0 in right wm, xrange [-1, 257]
searching rotation angles z=[-7 7], y=[83 97]
searching scale 1 Z rot 6.8 global minimum found at slice 0.0, rotations (90.00, -0.00)
final transformation (x=0.0, yr=90.000, zr=-0.000):
-0.000 0.000 1.000 128.000;
-0.000 1.000 -0.000 128.000;
-1.000 0.000 0.000 128.000;
0.000 0.000 0.000 1.000;
Segmentation fault
Darwin dhcp-165-124-23-248.prevmed.northwestern.edu 12.4.0 Darwin Kernel Version 12.4.0: Wed May 1 17:57:12 PDT 2013; root:xnu-2050.24.15~1/RELEASE_X86_64 x86_64
recon-all -s avgseg_seg_test exited with ERRORS at Mon Aug 19 13:32:28 CDT 2013
I don't know if this error is directly related to the actual brain segmentation, but recon-all was run with a different gca atlas. The command was:
recon-all -gca atlas.gca -all -s <subjID>
My best guess is that the .gca file is the source of the problem, but I am not sure why recon-all would make it to the final transformation and then throw an error.
Any ideas?
Thanks in advance.
MP