Hi Bruce,

Indeed norm.mgz isn't empty but doesn't look well (truncated and warped).

Is this bug fixed in the v6 beta release ?

If this is the case :
1) Would you advise me to try on the v6 ?
2) Should I so relaunch all recon-all process on my subjects computed with v5.3  and work only with the v6 beta ?

Best regards,
Matthieu

2015-12-09 15:55 GMT+01:00 Bruce Fischl <fischl@nmr.mgh.harvard.edu>:
Hi Matthieu

this might be a bug that is fixed in 6.0. Can you cehck the input to
mri_cc (norm.mgz) and make sure it is not empty? In older versions if the
skull stripping failed and generated an empty
norm.mgz/aseg.auto_noCCseg.mgz the mri_cc code would hang.

cheers
Bruce

On Wed, 9 Dec 2015,
Matthieu Vanhoutte wrote:

> Dear FS epxerts,
>
> I have launched a recon-all process on a subject. Unfortunately, I tried two times but the process get stucked at the same step
> without error.
>
> Please found the recon-all.log associated attached to this mail.
>
> Thanks in advance for helping !
>
> Best regards,
> Matthieu
>
>
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