On Sat, Sep 16, 2017 at 8:09 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

sorry, can you clarify what your question is?

On Sat, 16 Sep 2017, Fereshte
wrote:

> Dear FreeSurfer developers
> I couldn't find the mentioned mris_volume in the commands. Shall i use mri_vol2surf or something?
> Looking forward to hearing from you!
> On Tue, Sep 5, 2017 at 9:46 AM Fereshte <fereshte.ramezani@gmail.com> wrote:
> Hi Bruce,
> Thank you for your replies.
> Cheers
>
> On Tue, Sep 5, 2017 at 4:52 AM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
> Hi Fereshte
>
> the algorithm is documented in the recon1 1999 NeuroImage and 2000 PNAS
> papers
>
> cheers
> Bruce
> On Mon, 4 Sep 2017, Fereshte wrote:
>
> > What's the algorithm used to expand inner cortical boundary ( to achieve the
> outer cortical boundary
> > in pial surface) in FreeSurfer?
> > On Mon, Sep 4, 2017 at 9:58 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
> > it will give the interior volume of whatever surface you give it as a
> > command line argument.
> >
> > On Mon, 4 Sep 2017, Fereshte
> > wrote:
> >
> > > Using the Pial surface; Does it mean mris_volume will give the inner
> cortical boundary
> > of the
> > > surface and not the outer boundary?
> > > Sincerely,
> > > Fereshte Ramezani
> > > On Mon, Sep 4, 2017 at 9:53 PM Fereshte <fereshte.ramezani@gmail.com>
> wrote:
> > >
> > > On Mon, Sep 4, 2017 at 6:46 PM Bruce Fischl
> <fischl@nmr.mgh.harvard.edu> wrote:
> > > sure, mris_volume will give you the interior volume of any closed
> surface
> > > using the divergence formula. Note that this is *not* the volume
> of the
> > > ribbon but rather the volume of the entire interior
> > >
> > > cheers
> > > Bruce
> > >
> > >
> > > On Mon, 4 Sep 2017, Fereshte wrote:
> > >
> > > > Hello FreeSurfer developersIs it possible to have the volume of
> pial surface
> > in
> > > FreeSurfer?
> > > >
> > > >_______________________________________________
> > > Freesurfer mailing list
> > > Freesurfer@nmr.mgh.harvard.edu
> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > >
> > >
> > > The information in this e-mail is intended only for the person to
> whom it is
> > > addressed. If you believe this e-mail was sent to you in error and
> the e-mail
> > > contains patient information, please contact the Partners
> Compliance HelpLine at
> > > http://www.partners.org/complianceline . If the e-mail was sent to
> you in error
> > > but does not contain patient information, please contact the
> sender and properly
> > > dispose of the e-mail.
> > >
> > >
> > >_______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> >
> > The information in this e-mail is intended only for the person to whom it
> is
> > addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> > contains patient information, please contact the Partners Compliance
> HelpLine at
> > http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> > but does not contain patient information, please contact the sender and
> properly
> > dispose of the e-mail.
> >
> >
> >_______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the e-mail
> contains patient information, please contact the Partners Compliance HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in error
> but does not contain patient information, please contact the sender and properly
> dispose of the e-mail.
>
>
>_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.