Dear colleagues, especially Lilla Zollei,<div><br><div>I am trying to run mri_cvs_register on a 64-bit Mac but it crashes at the same place where other people had reported a problem. I tried updating mri_cvs_register from ftp as recommended in: </div>
<div><a href="https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-June/018786.html">https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-June/018786.html</a></div><div>but that didn&#39;t help.</div><div><br>
</div><div>The problem seems to be the exact same problem mentioned on this thread:</div><div><a href="https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-December/021457.html">https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-December/021457.html</a></div>
<div><br></div><div>I paste a small chunk of the log below at the point the PETSC ERROR occurs.  I attach the whole log file. </div><div><br></div><div>Has anyone come up with a solution?</div><div><br></div><div>Thanks so much for your help,</div>
<div><br></div><div>Rey</div><div><br></div><div>...</div><div><div>setting bc 51.75 25.0698 42.9884 -&gt; 0 0 0</div><div><span class="Apple-tab-span" style="white-space:pre">	</span> instead 51.76 25.0798 42.9984 -&gt; norm = 0.0173205</div>
<div> computing statistics for the displacement application error</div><div> average norm of error in placement = 0.0173205</div><div> iterating</div><div> done with candidates</div><div> Active BCs = 77063</div><div> Total BCs = 527338</div>
<div> no-eqs = 209160</div><div>surf2vol(51421) malloc: *** mmap(size=251830272) failed (error code=12)</div><div>*** error: can&#39;t allocate region</div><div>*** set a breakpoint in malloc_error_break to debug</div><div>
[0]PETSC ERROR: --------------------- Error Message ------------------------------------</div><div>[0]PETSC ERROR: Out of memory. This could be due to allocating</div><div>[0]PETSC ERROR: too large an object or bleeding by not properly</div>
<div>[0]PETSC ERROR: destroying unneeded objects.</div><div>[0]PETSC ERROR: Memory allocated 0 Memory used by process 0</div><div>[0]PETSC ERROR: Try running with -malloc_dump or -malloc_log for info.</div><div>[0]PETSC ERROR: Memory requested 251828644!</div>
<div>...</div>-- <br><span style="font-family:times new roman,serif">Rey R. Ramírez, Ph.D.</span><br style="font-family:times new roman,serif"><span style="font-family:times new roman,serif">MEG Brain Imaging Center</span><font style="font-family:times new roman,serif" face="verdana, arial, helvetica, sans-serif" size="2"><br>
Institute for Learning &amp; Brain Sciences</font><font style="font-family:times new roman,serif" face="verdana, arial, helvetica, sans-serif" size="2"><br>Portage Bay Building<br>Box 357988<br>University of Washington<br>
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