Colin27 I believe has been reconned, and if not you can just run it and use our standard tools for mapping. The others you can use the talairach.xfm for, but it won't be terribly accurate. You can't use our training and labeling unless you have the original datasets that went into the atlas.

On Dec 19, 2012, at 8:05 AM, Gabriel Gonzalez Escamilla <ggonesc@upo.es> wrote:

Dear Freesurfers,

Sorry for so many and basic questions lately.

I'm working with my set of subjects (T1), and I'm looking for a different WM parcellation than the aseg.mgz, I have an atlas (JHU atlas in MNI space, Mori et al 1999, and some other in Colin27 space).

I'm guessing I will have to use the FSaverage subject as target space. Since FS has many algorithms to make registrations, and the mris_ca_train requieres the predefined labels into an anootation file. I'm wondering about the best way to translate all the WM labeling from this atlas into FS space.

Many thanks in advanced,
Gabriel

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