External Email - Use Caution
Lauren Stephens, MS
Assistant Clinical Research Coordinator
Department of Psychiatry and Behavioral Science
Stanford University School of Medicine
E: laurenss@stanford.edu
Last login: Tue Jan 31 13:34:25 on ttys001
-bash: $: command not found
-------- freesurfer-darwin-macOS-7.1.1-20200811-8b40551 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /Applications/freesurfer/7.1.1
FSFAST_HOME /Applications/freesurfer/7.1.1/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /Applications/freesurfer/7.1.1/subjects
MNI_DIR /Applications/freesurfer/7.1.1/mni
FSL_DIR /usr/local/fsl
PSYC-C02DP05D0833:~ corpuscallosum$ cd Desktop/freesurfer_qc
PSYC-C02DP05D0833:freesurfer_qc corpuscallosum$ freeview -v \
> CS040/mri/brainmask.mgz \
> CS040/mri/wm.mgz:visible=0 \
> CS040/mri/orig.mgz:visible=0 \
> CS040/mri/aparc.a2009s+aseg.mgz:visible=0 \
> -f CS040/surf/lh.white:edgecolor=yellow \
> CS040/surf/rh.white:edgecolor=yellow \
> CS040/surf/rh.pial:edgecolor=red \
> CS040/surf/lh.pial:edgecolor=red \
> -viewport cor -layout 4
error: mghRead(/Users/corpuscallosum/Desktop/freesurfer_qc/CS040/mri/brainmask.mgz, -1): could not open file
MRIread failed: Unable to read from /Users/corpuscallosum/Desktop/freesurfer_qc/CS040/mri/brainmask.mgz
PSYC-C02DP05D0833:freesurfer_qc corpuscallosum$
Lauren Stephens, MS
Assistant Clinical Research Coordinator
Department of Psychiatry and Behavioral Science
Stanford University School of Medicine
E: laurenss@stanford.edu
P: (650)-725-1716