Hi there,

I am currently trying to run freesurfer version 5.3.0 on a cluster and am encountering an error when running recon-all.

The error is:

Writing to ./tmp.mri_nu_correct.mni.2867/output.mean.dat

mri_segstats done

mris_calc -o ./tmp.mri_nu_correct.mni.2867/nu2.mnc ./tmp.mri_nu_correct.mni.2867/nu2.mnc mul

Linux blue34 2.6.18-164.6.1.el5 #1 SMP Tue Oct 27 11:28:30 EDT 2009 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s 22057 exited with ERRORS at Wed Nov 27 12:31:54 GMT 2013

Does anyone know what might be causing recon-all to exit at this point? I have attached the full log file.

Thanks,

Eli

Eli Johnson
Research Assistant, Track-On
UCL Institute of Neurology, Box 104 Queen Square, London, WC1N 3BG
Tel:+44(0)207 242 0038