Hi,

I am trying to use an annotation file that was created from a parcellation scheme developed in my lab with mri_surfcluster. However, it's unclear to me how I can set the corresponding color table for this annotation file either locally or globally. mri_surfcluster doesn't seem to have a --ctab or --colortable argument. Is there a way to set the color table as an environment variable and would this be an appropriate workaround or is it the case that the color table is a fixed setting for mri_surfcluster?

Your help is greatly appreciated.

Cheers,
Elisa

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Elisa Golfinopoulos
Speech Laboratory
Cognitive and Neural Systems
Boston University
Phone: 617.353.6181