Hi Eva,
Have you taken a look at the help text for mri_segstats (mri_segstats --help)? The information under 'summary file format' and 'examples' may be helpful.
Also, this page might have some helpful information for you on working with FreeSurfer stats files:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/AnatomicalROIV6.0
Please let us know if there's anything you'd like us to clarify.
Best,
Emma
Hello,
That worked! Thank you very much. Also, I am trying to understand the information given by mri_segstats and I can find info on the different arguments for the command but not on how to interpret the output. Any recommendations?
Thank you!
Eva
From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu]
On Behalf Of Douglas Greve
Sent: 22 August 2017 17:33
To: freesurfer@nmr.mgh.harvard.edu
Subject: EXT: Re: [Freesurfer] Freesurfer tutorial
try it without doing any reshaping. If that works, then I'll edit the wiki
On 8/22/17 12:00 PM, Esteban, Eva(GE Healthcare) wrote:
Good afternoon,
I am new to Freesurfer and following the instructions to find out the Cortical Thickness of a Volume-defined ROI(http://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThickness), everything goes well until step 4. Even if I try to use –reshape-factor 7 as suggested, it reshapes it to 6 and so the next step gives an error because the segmentation is shaped to 7. Would anyone mind giving me some guidance on how to do it?
Many thanks,
Eva
_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer