Hi Douglas,

Previously, after I ran recon-all, I would get multiple labels for the same brain area. For example, for BA3b, I have BA3b.label, BA3b.hmap.label and BA3b.thresh.label for each hemisphere.

However this time I only have BA3b_exvivo.label, I wonder how would I get other labels, which command should I run?

Many Thanks

On Wed, 24 Jun 2020 at 16:09, Douglas N. Greve <dgreve@mgh.harvard.edu> wrote:

I'm not sure what you mean by "like lh.BA3b.label". Are you just talking about the file name or the actual label?

On 6/24/2020 7:37 AM, Peng Liu wrote:
External Email - Use Caution

Dear Freesurfer experts,

I was trying to perform some ROI analysis with results obtained from recon-all. However I noticed that after recon-all, the labels created were like 'lh.BA3b_exvivo.label', whereas the labels I would want to create are like 'lh.BA3b.label'.

I have tried mri_annotation2label command, but the results I got were not as wanted either.

Does anyone know how to create labels like 'lh.BA3b.label'?

Any help would be appreciated a lot!

Many Thanks

PL

--------------------------------------------

Peng Liu, PhD Candidate

Institut für Kognitive Neurologie und Demenzforschung (IKND)

Otto-von-Guericke Universität Magdeburg

Deutsches Zentrum für Neurodegenerative Erkrankungen e.V. (DZNE)

Leipziger Str. 44| Haus 64| Raum 217

39120 Magdeburg, Deutschland

Email: peng.liu@med.ovgu.de/Peng.Liu@dzne.de

Phone: +49 391 67 25074
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