Centos 5 uses libstdc++.so.6

 

You need to create a symbolic link using ln -s

 

From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Seth Elkin-Frankston
Sent: segunda-feira, 29 de outubro de 2007 16:00
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] freesurfer help

 

Hello,

 

I'm running v.4.0.1 on CentOS 5. When attempting to run autorecon1 I receive the error below. Any help is appreciated.

 

Thanks

Seth Elkin-Frankston

 

 

 

----

Iteration 1 Mon Oct 29 09:47:59 EDT 2007

nu_correct -clobber ./tmp.mri_nu_correct.mni.8422/nu0.mnc

./tmp.mri_nu_correct.mni.8422/nu1.mnc

[NeuroBio@lr8to10-dhcp-131-112.bumc.bu.edu:/usr/local/freesurfer/subjects/Bo

bFS/mri/] [2007-10-29 09:47:59] running:

  /usr/local/freesurfer//mni/bin/nu_estimate_np_and_em -parzen -log -sharpen

0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify

-b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir

/usr/tmp/nu_correct_8477/ ./tmp.mri_nu_correct.mni.8422/nu0.mnc

./tmp.mri_nu_correct.mni.8422/nu1.imp

 

/usr/local/freesurfer//mni/bin/volume_stats: error while loading shared

libraries: libstdc++.so.5: cannot open shared object file: No such file or

directory

nu_estimate_np_and_em: crashed while running volume_stats (termination

status=32512)

nu_correct: crashed while running nu_estimate_np_and_em (termination

status=32512)

ERROR: nu_correct

Linux lr8to10-dhcp-131-112.bumc.bu.edu 2.6.18-8.1.15.el5 #1 SMP Mon Oct 22

08:32:04 EDT 2007 i686 i686 i386 GNU/Linux

 

recon-all exited with ERRORS at Mon Oct 29 09:47:59 EDT 2007

 



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