Centos 5 uses libstdc++.so.6
You need to create a
symbolic link using ln -s
From: freesurfer-bounces@nmr.mgh.harvard.edu
[mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Seth
Elkin-Frankston
Sent: segunda-feira, 29 de outubro de 2007 16:00
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] freesurfer help
Hello,
I'm running v.4.0.1 on CentOS 5. When
attempting to run autorecon1 I receive the error below. Any help is
appreciated.
Thanks
Seth Elkin-Frankston
----
Iteration 1 Mon Oct 29 09:47:59 EDT 2007
nu_correct -clobber
./tmp.mri_nu_correct.mni.8422/nu0.mnc
./tmp.mri_nu_correct.mni.8422/nu1.mnc
[NeuroBio@lr8to10-dhcp-131-112.bumc.bu.edu:/usr/local/freesurfer/subjects/Bo
bFS/mri/] [2007-10-29 09:47:59] running:
/usr/local/freesurfer//mni/bin/nu_estimate_np_and_em
-parzen -log -sharpen
0.15 0.01 -iterations 50 -stop 0.001
-shrink 4 -auto_mask -nonotify
-b_spline 1 -distance 200 -quiet
-execute -clobber -nokeeptmp -tmpdir
/usr/tmp/nu_correct_8477/
./tmp.mri_nu_correct.mni.8422/nu0.mnc
./tmp.mri_nu_correct.mni.8422/nu1.imp
/usr/local/freesurfer//mni/bin/volume_stats:
error while loading shared
libraries: libstdc++.so.5: cannot open
shared object file: No such file or
directory
nu_estimate_np_and_em: crashed while
running volume_stats (termination
status=32512)
nu_correct: crashed while running
nu_estimate_np_and_em (termination
status=32512)
ERROR: nu_correct
Linux lr8to10-dhcp-131-112.bumc.bu.edu
2.6.18-8.1.15.el5 #1 SMP Mon Oct 22
08:32:04 EDT 2007 i686 i686 i386
GNU/Linux
recon-all exited with ERRORS at Mon Oct
29 09:47:59 EDT 2007
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