None! You have to run it all the way through to the end and then run them from the command line.

On 4/17/2020 11:40 AM, Billah, Tashrif wrote:

Hi all,

Which of the three autorecons makes use of https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields flags?

autorecon1, 2 , or 3?

My goal is to use the flag specifically with one of the three and not with recon-all in general as shown in the above page.

I do understand that the new version of the commands are https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmygdala

Best,

Tashrif

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