Dear FreeSurfer experts:

I have some issues with "preproc-sess" because I cannot seem to get the setup of the directory structure or files to connect different things(the T1 subjects with functional bold or rest files). I have this output.

root@andraderenew:/home/andraderenew/Downloads/barrios/project# preproc-sess -s sess1 -fsd bold -stc up -surface fsaverage lhrh -mni305 -fwhm 5 -per-run
--------------------------------------------------------------
preproc-sess logfile is log/preproc-sess.sess1.log
--------------------------------------------------------------
$Id: preproc-sess,v 1.64.2.1 2016/08/02 21:19:09 greve Exp $
root
setenv FREESURFER_HOME /usr/local/freesurfer
setenv SUBJECTS_DIR /usr/local/freesurfer/subjects
Linux andraderenew 5.0.0-36-generic #39~18.04.1-Ubuntu SMP Tue Nov 12 11:09:50 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
/home/andraderenew/Downloads/barrios/project
/usr/local/freesurfer/fsfast/bin/preproc-sess
-s sess1 -fsd bold -stc up -surface fsaverage lhrh -mni305 -fwhm 5 -per-run
vie nov 29 07:33:28 CET 2019
instem   f
mc   1     f fmcpr
stc 1    fmcpr fmcpr.up
sm   0
mask 1   brain
sess1 Template -----------------------------
mktemplate-sess -s sess1 -d /home/andraderenew/Downloads/barrios/project -fsd bold -update

Session: /home/andraderenew/Downloads/barrios/project/sess1 ----------------
vie nov 29 07:33:28 CET 2019
ERROR: no run directories found

my working directory is

root@andraderenew:/home/andraderenew/Downloads/barrios/project# pwd
/home/andraderenew/Downloads/barrios/project

and

root@andraderenew:/home/andraderenew/Downloads/barrios/project# ls
copy.sh sess1 sess2 sess4 sess6 sess8 sessidlist
log sess10 sess3 sess5 sess7 sess9 sessidlist~

root@andraderenew:/home/andraderenew/Downloads/barrios/project# cd sess1
root@andraderenew:/home/andraderenew/Downloads/barrios/project/sess1# ls
bold rest subjectname

root@andraderenew:/home/andraderenew/Downloads/barrios/project/sess1# cd bold
root@andraderenew:/home/andraderenew/Downloads/barrios/project/sess1/bold# ls
1
root@andraderenew:/home/andraderenew/Downloads/barrios/project/sess1/bold# cd 1
root@andraderenew:/home/andraderenew/Downloads/barrios/project/sess1/bold/1# ls
sub-0030689_task-resthypnotic_bold.nii.gz

And that is all. If I try with tutorial data there is no problem. One of the obvious differences is SUBJECTS_DIR is pointing not to subjects in freesurfer but to another folder where also is fsaverage. I don't know if this is required or I am missing another linking file.

There you can see the files I have searched with terminal.

Sincerely,
Andrade.