hmmm, I don't see anything glairing in the log. I guess upload the subject
and we'll take a look
Bruce


On Wed, 20 Feb 2019, mara
alves wrote:

>
>         External Email - Use Caution        
>
> Here is the recon-all.log for one for old subjects.Thanks,
> Mara
>
> mara alves <mara.f.alves@gmail.com> escreveu no dia quarta, 20/02/2019 à(s) 09:57:
>       Hi,
> Thanks for the quick reply. What do you mean about uploading the entire subject? All the
> output files of the recon -all?
>
> Best,
> Mara
>
> Bruce Fischl <fischl@nmr.mgh.harvard.edu> escreveu no dia terça, 19/02/2019 à(s) 23:10:
>       wow, that looks pretty bad. Can you send us the recon-all.log (or upload
>       the entire subject and we will investigate)?
>       On Tue, 19 Feb 2019, mara alves
>       wrote:
>
>       >
>       >         External Email - Use Caution        
>       >
>       > Hi there,
>       >
>       > I ran the recon -all command in two samples, one of young participants and
>       another of older
>       > subjects.
>       >
>       > The segmentation worked well for young participants, however it seems that for
>       older participants
>       > the white.pial segmentation it is being done incorrectly. I believe it is
>       segmenting the gray matter
>       > instead (please see the pics attached).
>       >
>       > Best,
>       > Mara
>       >
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