Hi Tara
try:
recon-all  -s  <subject>     -randomness   -all

Jon

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Tara Miskovich <miskovi2@uwm.edu>
Sent: Friday, August 22, 2014 12:07 PM
To: Freesurfer support list
Subject: [Freesurfer] LGI Topological Defect
 
Hi all,

I am getting an error that seems common for people running LGI where it crashes due to a topological defect.

I have run mris_euler_number and everything looks fine. Plus, I went through each slice and made sure the surfaces looked good.

Any advice on any other steps I can take? I have already tried rerunning recon-all.

Thank you!
Tara