Hello all,
I've recently downloaded Freesurfer 5 and was going through the FSFAST tutorial.
I keep on getting an error saying when I run "preproc-sess -s mgh-101.1 -fwhm 5 -per-run":
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preproc-sess logfile is log/preproc-sess.log
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$Id: preproc-sess,v 1.31.2.4 2010/07/26 15:55:24 greve Exp $
fmri
setenv FREESURFER_HOME /Applications/freesurfer
setenv SUBJECTS_DIR /Applications/freesurfer/subjects
Darwin copernicus.bcricwh.lan 9.7.0 Darwin Kernel Version 9.7.0: Tue Mar 31 22:52:17 PDT 2009; root:xnu-1228.12.14~1/RELEASE_I386 i386
/Applications/freesurfer/fsfast-tutorial/my-study
/Applications/freesurfer/fsfast/bin/preproc-sess
-s mgh-101.1 -fwhm 5 -per-run
Thu 2 Sep 2010 11:03:13 PDT
instem f
mc 1 f fmcpr
stc 0 fmcpr
sm 0
mask 1 brain
mgh-101.1 Template -----------------------------
mktemplate-sess -s mgh-101.1 -d /Applications/freesurfer/fsfast-tutorial/my-study -fsd bold -update
Session: /Applications/freesurfer/fsfast-tutorial/my-study/mgh-101.1 ----------------
Thu 2 Sep 2010 11:03:13 PDT
find: illegal option -- m
find: illegal option -- a
find: illegal option -- e
find: illegal option -- p
find: illegal option -- t
find: illegal option -- h
find: 1: No such file or directory
ERROR: no run directories found
Anyone managed to encounter this problem in the past?
Thanks in advance for your help!
Best Regards,
Danny Kim
BC Children's Hospital