Il giorno mar 12 feb 2019 alle ore 17:21 Bruce Fischl <fischl@nmr.mgh.harvard.edu> ha scritto:

Hi Francesca

sorry, I defer to Doug on the details of mri_vol2vol.

cheers
Bruce

On Tue, 12 Feb 2019,
Francesca Strappini wrote:

>
> External Email - Use Caution
>
> Thank you for the reply!
> I run:
> mri_vol2vol --reg register.dat --mov func_data.nii.gz --targ
> /usr/local/freesurfer/subjects/sub3/mri/T1.mgz --o func_data_registered2T1.nii.gz --no-resample
>
> Then I checked the registration and it seems that the original run is better aligned to the T1 than
> the registered one. Maybe am I not running mri_vol2vol correctly?
>
> Thanks!
> Best
>
>
> Il giorno mar 12 feb 2019 alle ore 02:19 Bruce Fischl <fischl@nmr.mgh.harvard.edu> ha scritto:
> Hi Francesca
>
> check out the --no-resample option in mri_vol2vol. It just changes the
> header, so I think should do what you want.
>
> cheers
> Bruce
>
>
> On Tue, 12 Feb 2019, Francesca Strappini wrote:
>
> >
> > External Email - Use Caution
> >
> > Dear Freesurfer's experts,
> >
> > I would like to register some functional data to the T1, that were collected in
> separate days.
> > I used bbregister:
> >
> > bbregister --s sub3 --mov func_data.nii.gz - --reg register.dat --init-coreg --t1
> >
> > Now, I would like to resample the data based on the register.dat without upsampling
> and keeping the
> > same FoV (3x3x3 mm; 64 64 50). Is it doable?
> >
> > Thanks!
> > Best
> >
> >
> > --
> > Francesca Strappini, Ph.D.
> > Neurobiology Department
> > Weizmann Institute of Science
> > 234 Herzl Street, Rehovot 7610001 Israel
> > Tel.: +972 58 444 2584
> > E-mail: francesca.strappini@weizmann.ac.il
> >
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>
>
> --
> Francesca Strappini, Ph.D.
> Neurobiology Department
> Weizmann Institute of Science
> 234 Herzl Street, Rehovot 7610001 Israel
> Tel.: +972 58 444 2584
> E-mail: francesca.strappini@weizmann.ac.il
>
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