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Dear Eugenio,

here it is:

asegModBinDilated.mgz
asegModBinDilatedResampled.mgz
asegModCHA.mgz
asegMod.mgz
asmr1.mgz
asmr2.mgz
asmr3.mgz
compressionLookupTable.txt
discreteLabels_all.mgz
discreteLabelsMergedBodyHead.mgz
discreteLabels.mgz
discreteLabelsWholeBodyHead.mgz
error.log
hippoAmygBinaryMask_autoCropped.mgz
hippoAmygBinaryMask.mgz
hippoMaskDilated5mm.mgz
hippoMask.mgz
hippoMaskResampledDilated.mgz
hippoMaskResampled.mgz
imageDump.mgz
image.mgz
T1resampled.mgz
trash.lta
volumesAmygdala.txt
volumesHippo.txt
warpedMeshNoAffine.txt.gz
warpedMesh.txt.gz
warpedOriginalMesh.txt.gz

Antonin


Dear Antonin,
Can you please send me a listing of the files in:
/hydra-db/hydra_io/vypocty/freeSurfer/A_analysis_HPC_PFC/A_links_all/ESO_C00577_20160303_1246_1/tmp/hippoSF_T1_v21_right/
Kind regards,
/Eugenio

--
Juan Eugenio Iglesias
ERC Senior Research Fellow
Centre for Medical Image Computing (CMIC)
University College London
http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/


From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Antonin Skoch 
<a...@ikem.cz>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Friday, 17 August 2018 at 18:16
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] segmentHA_T1.sh exits with error


        External Email - Use Caution
Dear experts,

I am running segmentHA_T1.sh. In about 3 subjects from 200, the script exits 
with following error:

In an assignment  A(:) = B, the number of elements in A and B must be the same.

Error in segmentSubjectT1_autoEstimateAlveusML (line 1856)

MATLAB:subsassignnumelmismatch
Command exited with non-zero status 255

Full log file is attached. I have also uploaded whole subject (named 
segmentHA_T1_error.tar.gz ), including content of temporary directory  
hippoSF_T1_v21_right, to your server.

I am using dev version, build 2018-07-28. I am using customized recon-all, but 
it should not relate to this error. Could you please look at this issue?

Regards,

Antonin Skoch