Hi Ye

you only need to give it a single file from each run and it will find the rest. The only time you use -i more than once is if you acquired more than 1 T1-weighted volume. Definitely don't give it all the files that make up the same volume

cheers
Bruce

On Mon, 24 Jun 2013, ye tian wrote:

Dear David,
I wonder whether there is a short cut for recon-all -s Barbara -i
/path_to_data/scan1.dicom -i /path_to_data/scan2.dicom ... -i
/path_to_data/scan100.dicom 

Recon-all -i takes only a single file as an input. A typical user, however,
has hundreds of files for a particular subject. For example, the directory
Barbara may have 100 scans. Therefore, the above command is necessary to
include all the scans. 

I understand that I can write loops to a text file and then copy and paste
to command line. However, I wonder whether there is a simpler way to input
several files or even a directory to recon-all.

Thank you very much!

Sincerely,
Ye

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