thanks,

hope it'll work

anyway, looking forward for the version 6 release

cheers,

Shachar

On Mon, 14 Jan 2019 at 14:08 Glasser, Matthew <glasserm@wustl.edu> wrote:

Ubuntu 14.04 should still work.

Matt.

From: Shachar Gal <gal.shachar@gmail.com>
Date: Monday, January 14, 2019 at 5:43 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>, Matt Glasser <glasserm@wustl.edu>, Ido Tavor <idotavor@gmail.com>
Subject: Re: problem using recon-all

if the problem is with the versions, maybe downgrading my OS for now will do the trick? do you happen know what is the latest ubuntu that is compatible with the 5.3-HCP version? 

does this also occur in centOS?

thanks

On Sun, 13 Jan 2019 at 17:46 Shachar Gal <gal.shachar@gmail.com> wrote:

hello,

I using the HCP FreeSurfer Pipeline (using FreeSurfer 5.3-HCP version) on ubuntu, and I encounter this error (copying from the recon-all.log)

_______________________________________

#@# Talairach Sun Jan 13 17:35:07 IST 2019

/home/shachar/piano_hcp/102/102/mri

 mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz 

Linux maestro 4.15.0-43-generic #46-Ubuntu SMP Thu Dec 6 14:45:28 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s 102 exited with ERRORS at Sun Jan 13 17:35:08 IST 2019 _______________________________________

i'm a bit confused by the lack of error descriptions, and would appreciate any leads for solving it :)

Shachar

 

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