Mon Apr 20 15:13:23 BST 2026 cd /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02 setenv SUBJECTS_DIR /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer /usr/local/freesurfer/8.2.0/bin/recon-all -all -i sub-02_t1w.nii -s sub-02 subjid sub-02 setenv SUBJECTS_DIR /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer FREESURFER_HOME /usr/local/freesurfer/8.2.0 Actual FREESURFER_HOME /usr/local/freesurfer/8.2.0 build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 Linux gangoffour 6.6.87.2-microsoft-standard-WSL2 #1 SMP PREEMPT_DYNAMIC Thu Jun 5 18:30:46 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux PRETTY_NAME="Ubuntu 22.04.4 LTS" NAME="Ubuntu" VERSION_ID="22.04" VERSION="22.04.4 LTS (Jammy Jellyfish)" VERSION_CODENAME=jammy ID=ubuntu ID_LIKE=debian HOME_URL="https://www.ubuntu.com/" SUPPORT_URL="https://help.ubuntu.com/" BUG_REPORT_URL="https://bugs.launchpad.net/ubuntu/" PRIVACY_POLICY_URL="https://www.ubuntu.com/legal/terms-and-policies/privacy-policy" UBUNTU_CODENAME=jammy cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 10240 memorylocked 65536 kbytes maxproc 63377 maxlocks unlimited maxsignal 63377 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 15Gi 662Mi 14Gi 4.0Mi 784Mi 14Gi Swap: 4.0Gi 0B 4.0Gi ######################################## program versions used 8.2.0 (freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45) 8.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:23-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:23-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:23-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:24-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:24-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:24-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:24-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:24-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:24-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:24-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:24-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:24-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:25-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:25-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:25-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:25-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:25-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:25-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:25-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:25-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:25-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:25-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:26-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:26-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:26-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:26-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:26-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:26-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:26-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:26-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:26-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:26-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:27-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:27-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 8.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:27-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 8.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:27-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:27-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:27-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:27-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 mris_convert -all-info ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:27-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:27-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:28-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:28-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:28-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:28-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:28-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:28-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:28-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:28-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:28-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:29-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:29-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:29-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:29-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:29-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:29-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:29-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:29-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:29-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:30-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:30-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:30-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:30-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:30-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:30-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:30-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:30-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:30-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:31-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:31-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:31-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:31-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 8.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 8.2.0 TimeStamp: 2026/04/20-14:13:31-GMT BuildTime: Mar 14 2026 12:21:06 BuildStamp: freesurfer-linux-ubuntu22_x86_64-8.2.0-20260314-d932c45 User: hliu Machine: gangoffour Platform: Linux PlatformVersion: 6.6.87.2-microsoft-standard-WSL2 CompilerName: GCC CompilerVersion: 8.4.0 ####################################### GCADIR /usr/local/freesurfer/8.2.0/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /usr/local/freesurfer/8.2.0/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02 mri_convert /mnt/d/repos/CogLearn_fmri-data_formal/fmri/sub-02/anat/1_raw/sub-02_t1w.nii /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/orig/001.mgz mri_convert /mnt/d/repos/CogLearn_fmri-data_formal/fmri/sub-02/anat/1_raw/sub-02_t1w.nii /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/orig/001.mgz INFO: using NIfTI-1 sform (sform_code=1) reading from /mnt/d/repos/CogLearn_fmri-data_formal/fmri/sub-02/anat/1_raw/sub-02_t1w.nii... TR=5000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/orig/001.mgz... @#@FSTIME 2026:04:20:15:13:31 mri_convert N 2 e 11.28 S 0.33 U 3.70 P 35% M 61824 F 7 R 14120 W 0 c 2 w 19271 I 800 O 0 L 0.50 0.45 0.23 @#@FSLOADPOST 2026:04:20:15:13:43 mri_convert N 2 0.57 0.47 0.24 #-------------------------------------------- #@# MotionCor Mon Apr 20 15:13:53 BST 2026 Found 1 runs /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... Only one run found so motion correction will not be performed. I'll copy the run to rawavg and continue. cp /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/orig/001.mgz /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/rawavg.mgz mri_info /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/rawavg.mgz rawavg.mgz ======================================== Volume information for /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/rawavg.mgz type: MGH intent: MRI (0) dimensions: 240 x 340 x 340 voxel sizes: 0.650000, 0.647059, 0.647059 type: SHORT (4) fov: 220.000 dof: 1 xstart: -78.0, xend: 78.0 ystart: -110.0, yend: 110.0 zstart: -110.0, zend: 110.0 TR: 5000.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = 1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 1.5294 : x_a = 0.0000, y_a = 1.0000, z_a = 0.0000, c_a = 25.7684 : x_s = 0.0000, y_s = 0.0000, z_s = 1.0000, c_s = -33.1337 talairach xfm : Orientation : RAS Primary Slice Direction: axial voxel to ras transform: 0.6500 0.0000 0.0000 -76.4706 0.0000 0.6471 0.0000 -84.2316 0.0000 0.0000 0.6471 -143.1337 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant 0.272145 ras to voxel transform: 1.5385 0.0000 0.0000 117.6470 0.0000 1.5455 0.0000 130.1761 0.0000 0.0000 1.5455 221.2066 0.0000 0.0000 0.0000 1.0000 /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02 mri_convert /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/rawavg.mgz /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/orig.mgz --conform mri_convert /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/rawavg.mgz /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/orig.mgz --conform reading from /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/rawavg.mgz... TR=5000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) volume geometry: valid : 501331008 extent : (256, 256, 256) voxel : ( 1.0000, 1.0000, 1.0000) x_(ras) : (-1.0000, 0.0000, 0.0000) y_(ras) : ( 0.0000, 0.0000, -1.0000) z_(ras) : ( 0.0000, 1.0000, 0.0000) c_(ras) : ( 1.5294, 25.7684, -33.1337) shears : ( 0.0000, 0.0000, 0.0000) file : /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/rawavg.mgz changing data type from short to uchar (noscale = 0)... MRIchangeType: Building histogram 0 4090 1000, flo=0, fhi=0.999, dest_type=0 Reslicing using trilinear interpolation writing to /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/orig.mgz... @#@FSTIME 2026:04:20:15:14:03 mri_convert N 3 e 8.18 S 0.24 U 4.86 P 62% M 89664 F 0 R 29302 W 0 c 10 w 6569 I 0 O 0 L 0.84 0.53 0.27 @#@FSLOADPOST 2026:04:20:15:14:11 mri_convert N 3 0.86 0.55 0.28 mri_add_xform_to_header -c /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/transforms/talairach.xfm /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/orig.mgz /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/orig.mgz INFO: extension is mgz @#@FSTIME 2026:04:20:15:14:11 mri_add_xform_to_header N 4 e 1.60 S 0.06 U 0.68 P 46% M 23424 F 17 R 4556 W 0 c 0 w 1945 I 3656 O 0 L 0.86 0.55 0.28 @#@FSLOADPOST 2026:04:20:15:14:13 mri_add_xform_to_header N 4 0.86 0.55 0.28 mri_info /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/orig.mgz orig.mgz ======================================== Volume information for /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/orig.mgz type: MGH intent: MRI (0) dimensions: 256 x 256 x 256 voxel sizes: 1.000000, 1.000000, 1.000000 type: UCHAR (0) fov: 256.000 dof: 1 xstart: -128.0, xend: 128.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 5000.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = -1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 1.5294 : x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = 25.7684 : x_s = 0.0000, y_s = -1.0000, z_s = 0.0000, c_s = -33.1337 talairach xfm : /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/transforms/talairach.xfm Orientation : LIA Primary Slice Direction: coronal voxel to ras transform: -1.0000 0.0000 0.0000 129.5294 0.0000 0.0000 1.0000 -102.2316 0.0000 -1.0000 0.0000 94.8663 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant -1 ras to voxel transform: -1.0000 -0.0000 -0.0000 129.5294 -0.0000 -0.0000 -1.0000 94.8663 -0.0000 1.0000 -0.0000 102.2316 -0.0000 -0.0000 -0.0000 1.0000 lta_convert --inlta identity.nofile --src /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/rawavg.mgz --trg /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/orig.mgz --outlta /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/rawavg2orig.lta --subject sub-02 8.2.0 --inlta: identity.nofile input LTA transform. --src: /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/rawavg.mgz src image (geometry). --trg: /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/orig.mgz trg image (geometry). --outlta: /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/rawavg2orig.lta output LTA. --s: sub-02 subject name LTA read, type : 1 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; setting subject to sub-02 Writing LTA to file /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/rawavg2orig.lta... lta_convert successful. @#@FSTIME 2026:04:20:15:14:14 lta_convert N 10 e 2.89 S 0.10 U 0.63 P 25% M 6144 F 7 R 246 W 0 c 0 w 6583 I 1056 O 0 L 0.87 0.56 0.28 @#@FSLOADPOST 2026:04:20:15:14:17 lta_convert N 10 0.87 0.56 0.28 mri_synthstrip --threads 1 -i /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/orig.mgz -o /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/synthstrip.mgz Configuring model on the CPU Running SynthStrip model version 1 Input image read from: /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/orig.mgz Processing frame (of 1): 1 done Set background to: 0 Masked image saved to: /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/synthstrip.mgz If you use SynthStrip in your analysis, please cite: ---------------------------------------------------- SynthStrip: Skull-Stripping for Any Brain Image A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann NeuroImage 206 (2022), 119474 https://doi.org/10.1016/j.neuroimage.2022.119474 Website: https://synthstrip.io @#@FSTIME 2026:04:20:15:14:17 mri_synthstrip N 6 e 37.26 S 12.60 U 22.37 P 93% M 5936164 F 1480 R 6260625 W 0 c 73 w 5135 I 394368 O 0 L 0.87 0.56 0.28 @#@FSLOADPOST 2026:04:20:15:14:55 mri_synthstrip N 6 1.01 0.63 0.32 mri_synthseg --i /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/orig.mgz --o /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/mri/synthseg.rca.mgz --threads 1 --vol /mnt/d/repos/CogLearn_fmri-data_formal/fmri/freesurfer/sub-02/stats/synthseg.vol.csv --keepgeom --addctab --cpu free(): double free detected in tcache 2 Command terminated by signal 6 @#@FSTIME 2026:04:20:15:14:55 mri_synthseg N 11 e 9.72 S 1.43 U 3.04 P 46% M 456024 F 3608 R 61055 W 0 c 11 w 34031 I 704560 O 8 L 1.01 0.63 0.32 @#@FSLOADPOST 2026:04:20:15:15:04 mri_synthseg N 11 1.17 0.68 0.34 Linux gangoffour 6.6.87.2-microsoft-standard-WSL2 #1 SMP PREEMPT_DYNAMIC Thu Jun 5 18:30:46 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux recon-all -s sub-02 exited with ERRORS at Mon Apr 20 15:15:05 BST 2026 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting