#!/bin/bash
#SBATCH --job-name=Recon30
#SBATCH -p cubric-default
#SBATCH -o reports/%j.out
#SBATCH -e reports/%j.err

for subj in 30; do
 

export SUBJECTS_DIR=/home/c1749990/Documents/Analysis/Data/freesurfer/subjects

cd /home/c1749990/Documents/Analysis/Data/PMA_retinoScans/PPT_0${subj}/pre_processed_anatomy

recon-all -i T1.nii.gz -s PPT_0${subj} -all -label_v1

done