Dear Ruopeng,

 

Thanks a lot for your reply.

I am sorry, but I still could not fix this.

 

Do you mean a command like this:

freeview –v aparc+aseg.mgz:colormap=lut:isosurface=2032,2035

 

I could not perform what I have in mind using this command. I want to simultaneously show several different brain areas on a T1 image. The labels are so different; as examples, one is 14, one is 100, and one is 1250.

 

Currently I am extracting labels, and using MATLAB I overlay them on a T1 image.

I am sure Freesurfer should be able to nicely perform this, but this is not resolved for me yet :)

 

Many thanks again,

Amir