Thank you Doug/Bruce.
We would like to project our AFNI preprocessed EPI scans (T1-registration, motion correction, linear regression, but unsmoothed) to Freesurfer cortical surfaces in order to obtain one file containing 250 (number of dynamics) EPI-cortical surfaces in the native space. For this, we are using the following command:
mri_vol2surf --mov '4d_inputBOLD.nii' --reg 'register.dat' --hemi '[l/r]h' --projfrac 0.5 --interp nearest --o 'output.nii'
Is that correct?
As our EPI scans were previously registered with AFNI to T1 (that it is in FS space), I guess that bbregister is not required, right?
Thank you in advance.
Best wishes,
Marina.